research-architect-intakelisted

# First Paper Intake Use this branch before any brainstorming, literature mapping, design, or drafting. ## Goal Create a minimal but complete project configuration and source inventory. Do not overwhelm the user with a long questionnaire. Ask only for missing information that changes the workflow. ## Required questions 1. What is the raw topic, question, or project direction? 2. What materials already exist: notes, data, code, experiments, figures, draft fragments, references? 3. What is the desired immediate output: brainstormed ideas, research plan, first draft, or revision plan? 4. What are the constraints: time, data access, equipment, computation, collaborators, ethics, methods that must or cannot be used? 5. Should references be read from local files, specified paths, or web search? ## Outputs Create: ```text paper_output/project_config.json paper_output/source_map.md paper_output/source_inventory.md ``` Use `src/templates/project_config.json` as the schema. ## Source inventory schema | Source ID | Type | Path/Location | Description | User-Provided? | Evidence Status | Use In Workflow | |---|---|---|---|---|---|---| ## Rules - Treat all user-provided files as potentially relevant but not automatically reliable evidence. - Separate raw notes from verified results. - Separate literature sources from user evidence. - If the user has no results yet, mark the workflow as research planning, not first-draft generation. - If the user has results but no literature m