respond-to-referees

<!-- Adapted from pedrohcgs/claude-code-my-workflow (MIT), https://github.com/pedrohcgs/claude-code-my-workflow --> # Respond to Referees Produce a complete response-to-referees document by cross-referencing the referee report against the revised manuscript. Classify every concern, draft a courteous response for each, and flag anything unaddressed before submission. ## Inputs - `$0` — path to the referee report - `$1` — path to the revised manuscript Supported formats and how to read them. In the commands below, `FILE` stands for the input path being converted — either `$0` (referee report) or `$1` (revised manuscript). Always use `mktemp` for the temp file (not a predictable `/tmp/...` name) so paths with spaces and concurrent runs don't collide, and so untrusted `FILE` paths can't clobber other temp files via symlink races. | Format | How to extract text | | --- | --- | | `.tex`, `.qmd`, `.md`, `.txt` | Read directly with the `Read` tool. | | `.pdf` | `TMP=$(mktemp --suffix=.txt) && pdftotext "FILE" "$TMP"` (poppler-utils; use `mktemp -t ...` on macOS if `--suffix` is unsupported). Grep `"$TMP"`. | | `.docx` | `TMP=$(mktemp --suffix=.txt) && pandoc "FILE" -t plain -o "$TMP"` (or `docx2txt "FILE" "$TMP"`). Grep `"$TMP"`. | | `.html` | `TMP=$(mktemp --suffix=.txt) && pandoc "FILE" -t plain -o "$TMP"`. Grep `"$TMP"`. | If a required tool is missing or extraction fails, ask the user to provide a plain-text version (`.txt` or `.md`) and stop. ## Workflow ### Step 0: Co...