template-academic-paper

# Academic paper Template-native paper workflow. It uses project manuscript sources, generated variables, validation gates, and evidence registries rather than a copied external academic agent prompt. ## Natural invoke - "Help me plan this paper" - "Write the outline and methods section from these artifacts" - "Revise the manuscript after reviewer comments" - "Check citations and convert the final paper format" - "Write an AI-use disclosure tied to the repo evidence" ## Inputs to confirm - **Project** - resolve through `docs/_generated/active_projects.md`. - **Mode** - plan, outline, full, revision, format, citation-check, prose-quality, or disclosure. - **Manuscript style** - Pandoc-crossref or registry tokens; do not mix styles. - **Evidence sources** - generated variables, claim ledger, figures, tables, references, validation reports. ## Workflow 1. **Plan first when uncertain** - capture target venue, paper type, contribution, section map, and unresolved material gaps. 2. **Draft from artifacts** - write against `projects/<project>/manuscript/`, generated variables, figure captions, and citekeys; use `[MATERIAL GAP]` instead of fabricating missing evidence. 3. **Preserve injected values** - prefer `[[VAR:...]]`, registry-backed labels, citekeys, and project-defined cross-reference tokens over hard-coded numbers. 4. **Validate continuously** - run prerender, markdown, citation, PDF, and integrity checks appropriate to the mode. 5. **Self-edit the prose** - run the A...