biomni

# Biomni ## Overview Biomni is an open-source biomedical AI agent framework from Stanford's SNAP lab that autonomously executes complex research tasks across biomedical domains. Use this skill when working on multi-step biological reasoning tasks, analyzing biomedical data, or conducting research spanning genomics, drug discovery, molecular biology, and clinical analysis. ## Core Capabilities Biomni excels at: 1. **Multi-step biological reasoning** - Autonomous task decomposition and planning for complex biomedical queries 2. **Code generation and execution** - Dynamic analysis pipeline creation for data processing 3. **Knowledge retrieval** - Access to ~11GB of integrated biomedical databases and literature 4. **Cross-domain problem solving** - Unified interface for genomics, proteomics, drug discovery, and clinical tasks ## When to Use This Skill Use biomni for: - **CRISPR screening** - Design screens, prioritize genes, analyze knockout effects - **Single-cell RNA-seq** - Cell type annotation, differential expression, trajectory analysis - **Drug discovery** - ADMET prediction, target identification, compound optimization - **GWAS analysis** - Variant interpretation, causal gene identification, pathway enrichment - **Clinical genomics** - Rare disease diagnosis, variant pathogenicity, phenotype-genotype mapping - **Lab protocols** - Protocol optimization, literature synthesis, experimental design ## Quick Start ### Installation and Setup Install Biomni and configu...