cortex-setup-project

# Setup Project — Fully Autonomous Bootstrap Execute all four phases sequentially without asking the user any questions. If a phase fails, attempt automatic recovery before reporting the error. Never ask the user to run commands manually or choose between options. ## Phase 1: Infrastructure Verification 1. Call `cortex:memory_stats({})` to verify store connectivity. If it succeeds, the store is healthy — this covers **both** backends (the zero-config SQLite default needs no PostgreSQL, so do NOT run `pg_isready` or any PostgreSQL setup when this passes). Proceed to Phase 2. 2. Only if `memory_stats` fails: call `cortex:check_setup({})` (backend-aware diagnostics) to identify the failure. - SQLite backend reported: fix per the check output (usually `~/.claude/methodology` permissions or a corrupt `memory.db`); do NOT install PostgreSQL. - PostgreSQL backend reported: run `pg_isready` via bash, then `bash "${CLAUDE_PLUGIN_ROOT}/scripts/setup.sh"` automatically. Do not ask for permission. After setup.sh completes, call `cortex:memory_stats({})` again to verify. - If it still fails, report the error output and **stop**. Do not continue to later phases. ## Phase 2: Build Methodology Profiles 1. Call `cortex:rebuild_profiles({"force": true})` to scan all session history and build cognitive profiles per domain. 2. This creates the domain hubs that memories, entities, and discussions link to. It must run before seeding. 3. Record the domain count for the final summary. ...