snakemake-workflow-manager

Solid

Snakemake workflow management skill for rule-based pipeline execution

AI & Automation 1,160 stars 71 forks Updated today MIT

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Quality Score: 94/100

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Skill Content

# Snakemake Workflow Manager Skill ## Purpose Enable Snakemake workflow management for rule-based pipeline execution. ## Capabilities - DAG-based workflow execution - Cluster/cloud execution - Conda environment management - Checkpointing and resume - Benchmark collection - Report generation ## Usage Guidelines - Define rules with clear inputs/outputs - Use Conda for environment management - Configure for cluster execution - Enable checkpointing for large workflows - Collect benchmarks for optimization - Generate workflow reports ## Dependencies - Snakemake - Conda - Bioconda ## Process Integration - Reproducible Research Workflow (reproducible-research) - Analysis Pipeline Validation (pipeline-validation)

Details

Author
a5c-ai
Repository
a5c-ai/babysitter
Created
4 months ago
Last Updated
today
Language
JavaScript
License
MIT

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