metaphlan-profiler

Solid

MetaPhlAn metagenomic profiling skill for species-level community composition

AI & Automation 1,160 stars 71 forks Updated today MIT

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Quality Score: 94/100

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Skill Content

# MetaPhlAn Profiler Skill ## Purpose Enable MetaPhlAn metagenomic profiling for species-level community composition. ## Capabilities - Clade-specific marker gene analysis - Species-level quantification - Strain-level profiling (StrainPhlAn) - Unknown species estimation - Multi-sample heatmaps - Comparative analysis ## Usage Guidelines - Use latest marker database - Profile at species level for most analyses - Apply strain-level analysis when relevant - Visualize community composition - Compare across samples and conditions - Document database versions ## Dependencies - MetaPhlAn4 - StrainPhlAn - mOTUs ## Process Integration - Shotgun Metagenomics Pipeline (shotgun-metagenomics)

Details

Author
a5c-ai
Repository
a5c-ai/babysitter
Created
4 months ago
Last Updated
today
Language
JavaScript
License
MIT

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