gitnexus-clilisted

# GitNexus CLI Commands All commands work via `npx` — no global install required. ## Commands ### analyze — Build or refresh the index ```bash npx gitnexus analyze ``` Run from the project root. This parses all source files, builds the knowledge graph, writes it to `.gitnexus/`, and generates CLAUDE.md / AGENTS.md context files. | Flag | Effect | | -------------- | ---------------------------------------------------------------- | | `--force` | Force full re-index even if up to date | | `--embeddings` | Enable embedding generation for semantic search (off by default) | | `--drop-embeddings` | Drop existing embeddings on rebuild. By default, an `analyze` without `--embeddings` preserves them. | **When to run:** First time in a project, after major code changes, or when `gitnexus://repo/{name}/context` reports the index is stale. In Claude Code, a PostToolUse hook detects staleness after `git commit` and `git merge` and notifies the agent to run `analyze` — the hook does not run analyze itself, to avoid blocking the agent for up to 120s and risking KuzuDB corruption on timeout. ### status — Check index freshness ```bash npx gitnexus status ``` Shows whether the current repo has a GitNexus index, when it was last updated, and symbol/relationship counts. Use this to check if re-indexing is needed. ### clean — Delete the index ```bash npx gitnexus clean ``` Deletes the `