bearing-clilisted

# GitNexus CLI Commands <!-- BEGIN GENERATED: graph-uncertainty — bearing regenerates this block; edits here are replaced on update --> ## The graph can be wrong A zero is not absence; a near-0.5 `r.confidence` edge is a lead, not proof (~92% of `USES`); a count can be a floor — `impact` says which in `epistemic`. Before a conclusion that matters, confirm with a scoped `Grep` (allowed here, not a gate violation) and say which check you ran. <!-- END GENERATED: graph-uncertainty --> Commands below use `node .gitnexus/run.cjs <command>` — the project-local runner `gitnexus analyze` drops next to the index. It auto-selects an available runner at call time (global `gitnexus`, else `pnpm dlx`, else `npx`), so no package-manager assumption and no global install is required. > **Not analyzed yet, or `node .gitnexus/run.cjs` reports `Cannot find module`** (the gitignored runner is absent — e.g. a fresh clone or `git clean`)? (Re)generate it with `npx gitnexus analyze` from the project root. On **npm 11.x**, if `npx` crashes during install (`node.target is null`), install once with `npm i -g gitnexus` (then `gitnexus analyze`) or use `pnpm --allow-build=@ladybugdb/core --allow-build=gitnexus --allow-build=tree-sitter dlx gitnexus@latest analyze`. See [#1939](https://github.com/abhigyanpatwari/GitNexus/issues/1939). ## Commands ### analyze — Build or refresh the index ```bash node .gitnexus/run.cjs analyze ``` Run from the project root. This parses all source files, builds the