bioinformatics

# Bioinformatics Skills Gateway Use when asked about bioinformatics, genomics, sequencing, variant calling, gene expression, single-cell analysis, protein structure, pharmacogenomics, metagenomics, phylogenetics, or any computational biology task. This skill is a gateway to two open-source bioinformatics skill libraries. Instead of bundling hundreds of domain-specific skills, it indexes them and fetches what you need on demand. ## Sources ◆ **bioSkills** — 385 reference skills (code patterns, parameter guides, decision trees) Repo: https://github.com/GPTomics/bioSkills Format: SKILL.md per topic with code examples. Python/R/CLI. ◆ **ClawBio** — 33 runnable pipeline skills (executable scripts, reproducibility bundles) Repo: https://github.com/ClawBio/ClawBio Format: Python scripts with demos. Each analysis exports report.md + commands.sh + environment.yml. ## How to fetch and use a skill 1. Identify the domain and skill name from the index below. 2. Clone the relevant repo (shallow clone to save time): ```bash # bioSkills (reference material) git clone --depth 1 https://github.com/GPTomics/bioSkills.git /tmp/bioSkills # ClawBio (runnable pipelines) git clone --depth 1 https://github.com/ClawBio/ClawBio.git /tmp/ClawBio ``` 3. Read the specific skill: ```bash # bioSkills — each skill is at: <category>/<skill-name>/SKILL.md cat /tmp/bioSkills/variant-calling/gatk-variant-calling/SKILL.md # ClawBio — each skill is at: skills/<skill-n...