pubmed-database
FeaturedDirect REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
Install
Quality Score: 90/100
Skill Content
Details
- Author
- LeonChaoX
- Repository
- LeonChaoX/qinyan-academic-skills
- Created
- 6 months ago
- Last Updated
- 1 months ago
- Language
- Python
- License
- MIT
Integrates with
Similar Skills
Semantically similar based on skill content — not just same category
pubmed-database
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
pubmed-database
Use when searching biomedical literature via PubMed or NCBI E-utilities — MeSH queries, PMID lookup, abstract/citation retrieval, or API-backed literature monitoring. Covers PubMed field tags, publication-type and date filters, MeSH subheading syntax, and the E-utilities REST endpoints with a working Python request pattern.
biopython
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.