database-lookup

Solid

Search 78 public scientific, biomedical, materials science, and economic databases via REST APIs. Covers physics/astronomy (NASA, NIST, SDSS, SIMBAD), earth/environment (USGS, NOAA, EPA), chemistry/drugs (PubChem, ChEMBL, DrugBank, FDA, KEGG, ZINC, BindingDB), materials (Materials Project, COD), biology/genomics (Reactome, UniProt, STRING, Ensembl, NCBI Gene, GEO, GTEx, PDB, AlphaFold, InterPro, BioGRID, Gene Ontology, dbSNP, gnomAD, ENCODE, Human Protein Atlas, Human Cell Atlas), disease/clinical (COSMIC, Open Targets, ClinicalTrials.gov, OMIM, ClinVar, GDC/TCGA, cBioPortal, DisGeNET, GWAS Catalog), regulatory (FDA, USPTO, SEC EDGAR), economics/finance (FRED, World Bank, US Treasury), demographics (US Census, Eurostat, WHO). Use when looking up compounds, genes, proteins, pathways, variants, clinical trials, patents, economic indicators, or any public database API query.

API & Backend 26,817 stars 2774 forks Updated today MIT

Install

View on GitHub

Quality Score: 96/100

Stars 20%
100
Recency 20%
100
Frontmatter 20%
70
Documentation 15%
100
Issue Health 10%
50
License 10%
100
Description 5%
100

Skill Content

# Database Lookup You have access to 78 public databases through their REST APIs. Your job is to figure out which database(s) are relevant to the user's question, query them, and return the raw JSON results along with which databases you used. ## Core Workflow 1. **Understand the query** — What is the user looking for? A compound? A gene? A pathway? A patent? Expression data? An economic indicator? This determines which database(s) to hit. 2. **Select database(s)** — Use the database selection guide below. When in doubt, search multiple databases — it's better to cast a wide net than to miss relevant data. 3. **Read the reference file** — Each database has a reference file in `references/` with endpoint details, query formats, and example calls. Read the relevant file(s) before making API calls. 4. **Make the API call(s)** — See the **Making API Calls** section below for which HTTP fetch tool to use on your platform. 5. **Return results** — Always return: - The **raw JSON** response from each database - A **list of databases queried** with the specific endpoints used - If a query returned no results, say so explicitly rather than omitting it ## Database Selection Guide Match the user's intent to the right database(s). Many queries benefit from hitting multiple databases. ### Physics & Astronomy | User is asking about... | Primary database(s) | Also consider | |---|---|---| | Near-Earth objects, asteroids | NASA (NeoWs) | — | | Mars rover images | NASA (Mars...

Details

Author
K-Dense-AI
Repository
K-Dense-AI/scientific-agent-skills
Created
7 months ago
Last Updated
today
Language
Python
License
MIT

Integrates with

Similar Skills

Semantically similar based on skill content — not just same category

AI & Automation Listed

paper-lookup

Search 10 academic paper databases via REST APIs for research papers, preprints, and scholarly articles. Covers PubMed, PMC (full text), bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall. Use when searching for papers, citations, DOI/PMID lookups, abstracts, full text, open access, preprints, citation graphs, author search, or any scholarly literature query. Triggers on mentions of any supported database or requests like "find papers on X" or "look up this DOI".

0 Updated 2 days ago
fabioc-aloha
API & Backend Solid

paper-lookup

Search 10 academic paper databases via their REST APIs to find research papers, preprints, and scholarly articles. Covers biomedical literature (PubMed, PMC full text), preprint servers (bioRxiv, medRxiv, arXiv), multidisciplinary indexes (OpenAlex, Crossref, Semantic Scholar), open access aggregators (CORE, Unpaywall). Use this skill whenever the user wants to search for research papers, find citations, look up articles by DOI or PMID, retrieve abstracts or full text, check open access availability, find preprints, explore citation graphs, search by author or keyword, or access any scholarly literature database. Also trigger when the user mentions PubMed, PMC, bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall, or asks about paper metadata, citation counts, journal articles, manuscript lookups, literature reviews, or systematic searches. Even if the user just says "find papers on X" or "what's been published about Y" or "look up this DOI", this skill should activate.

26,817 Updated today
K-Dense-AI
AI & Automation Solid

reactome-database

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

2,210 Updated 1 weeks ago
foryourhealth111-pixel
API & Backend Solid

reactome-database

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

27,705 Updated today
davila7
API & Backend Listed

reactome-database

Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.

335 Updated today
aiskillstore