database-lookup

Featured

Query documented public database APIs with explicit endpoints, filters, pagination, and provenance. Use when a scientific, regulatory, financial, or other database-backed fact must be retrieved reproducibly from a named source rather than inferred from general knowledge.

API & Backend 44,401 stars 4028 forks Updated today MIT

Install

View on GitHub

Quality Score: 99/100

Stars 20%
100
Recency 20%
100
Frontmatter 20%
70
Documentation 15%
100
Issue Health 10%
50
License 10%
100
Description 5%
100

Skill Content

# Database Lookup This skill catalogs 78 public databases with documented API access patterns. Your job is to turn the user's intent into a reproducible retrieval: select the authoritative database(s), make bounded and rate-limited API calls, verify counts when completeness matters, and return results with enough provenance that another agent or human can repeat the lookup. For complex biomedical retrievals, assume small filtering differences can change downstream conclusions. Prefer deterministic APIs, explicit identifiers, exhaustive pagination, and auditable logs over broad searching or plausible summaries. ## Core Workflow 1. **Define the retrieval contract** — Identify the target entity, accepted identifiers, organism/taxon/build/date constraints, filters, expected output fields, and whether the user needs an exhaustive dataset or a targeted lookup. If a required scientific constraint is missing and affects correctness, ask a clarifying question rather than guessing. 2. **Select authoritative database(s)** — Use the database selection guide below. Prefer the primary database for the user's intent, then add cross-check databases only for identifier resolution, validation, or known coverage gaps. Do not fan out across many APIs just because they are available. 3. **Read the reference file and retrieval contract** — Each database has a reference file in `references/` with endpoint details, query formats, and example calls. Read the relevant file(s) and `references/ret...

Details

Author
K-Dense-AI
Repository
K-Dense-AI/scientific-agent-skills
Created
10 months ago
Last Updated
today
Language
Python
License
MIT

Similar Skills

Semantically similar based on skill content — not just same category

Data & Documents Listed

database-lookup

Query documented public database APIs with explicit endpoints, filters, pagination, and provenance. Use when a scientific, regulatory, financial, or other database-backed fact must be retrieved reproducibly from a named source rather than inferred from general knowledge.

0 Updated 4 days ago
timsmykov
API & Backend Listed

database-lookup

Search 78 public scientific, biomedical, materials science, and economic databases via REST APIs. Covers physics/astronomy (NASA, NIST, SDSS, SIMBAD), earth/environment (USGS, NOAA, EPA), chemistry/drugs (PubChem, ChEMBL, DrugBank, FDA, KEGG, ZINC, BindingDB), materials (Materials Project, COD), biology/genomics (Reactome, UniProt, STRING, Ensembl, NCBI Gene, GEO, GTEx, PDB, AlphaFold, InterPro, BioGRID, Gene Ontology, dbSNP, gnomAD, ENCODE, Human Protein Atlas, Human Cell Atlas), disease/clinical (COSMIC, Open Targets, ClinicalTrials.gov, OMIM, ClinVar, GDC/TCGA, cBioPortal, DisGeNET, GWAS Catalog), regulatory (FDA, USPTO, SEC EDGAR), economics/finance (FRED, World Bank, US Treasury), demographics (US Census, Eurostat, WHO). Use when looking up compounds, genes, proteins, pathways, variants, clinical trials, patents, economic indicators, or any public database API query.

13 Updated 1 months ago
tassiovale
Data & Documents Featured

paper-lookup

Search 10 academic literature APIs for papers, preprints, citations, and open-access full text, and return results with reproducible provenance. Covers PubMed, PMC (full text), bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall. Use when searching for papers, citations, DOI/PMID/arXiv lookups, abstracts, full text, open-access PDFs, preprints, citation graphs, author publications, or any scholarly literature query. Triggers on mentions of any supported database or requests like "find papers on X", "look up this DOI", "who cites this paper", or "get me the PDF".

3,387 Updated today
xintaofei