proteomicslisted

Proteomics analysis toolkit for label-free quantitative proteomics. Invokes R scripts for normalization, visualization (volcano, heatmap, PCA, LOPIT), pathway analysis (KEGG, ConsensusPathDB), and protein list cross-referencing (MISEV2018, SASP, Matrisome). USE WHEN user says 'analyze proteomics', 'volcano plot', 'normalize protein data', 'pathway enrichment', 'check EV markers', 'SASP analysis', 'matrisome', OR mentions q-value, fold-change, or protein quantification.
JoBBurt/proteomics-skill · ★ 2 · Data & Documents · score 55

Install: claude install-skill JoBBurt/proteomics-skill

# Proteomics Quantitative proteomics analysis toolkit combining R script invocation with embedded methodology knowledge. Fully portable - all scripts and reference data included. **Skill Directory:** `~/.claude/Skills/Proteomics/` --- ## Workflow Routing **When executing a workflow, output this notification:** ``` Running the **WorkflowName** workflow from the **Proteomics** skill... ``` | Workflow | Trigger | File | |----------|---------|------| | **Normalize** | "normalize data", "apply normalization", "median/quantile/loess normalize" | `workflows/Normalize.md` | | **VolcanoPlot** | "volcano plot", "create volcano", "visualize fold change" | `workflows/VolcanoPlot.md` | | **Heatmap** | "heatmap", "PCA", "correlation plot", "sample clustering" | `workflows/Heatmap.md` | | **PathwayAnalysis** | "pathway analysis", "KEGG enrichment", "ConsensusPathDB", "GO enrichment" | `workflows/PathwayAnalysis.md` | | **ProteinListQuery** | "check EV markers", "MISEV proteins", "exosome markers", "blood contaminants" | `workflows/ProteinListQuery.md` | | **ExcelWorkup** | "create Excel report", "filter by q-value", "generate data tables" | `workflows/ExcelWorkup.md` | | **Matrisome** | "matrisome analysis", "ECM proteins", "extracellular matrix" | `workflows/Matrisome.md` | | **SaspAnalysis** | "SASP analysis", "senescence factors", "core SASP" | `workflows/SaspAnalysis.md` | --- ## Examples **Example 1: Generate Volcano Plot** ``` User: "Create a volcano plot for my proteomics c