bioresearch-agent-routerlisted

# BioResearch Agent — Agent Router Skill ## Capability A **rule-based intent classifier** that translates a free-text research request into one of the framework's workflows/skills: | Route | Workflow / skill | |:---|:---| | `literature` | Literature review + co-occurrence graph (`bioresearch-literature-analysis`) | | `biomarker` | Biomarker discovery — DEG + enrichment (`bioresearch-biomarker-discovery`) | | `causal` | Mendelian randomization (`bioresearch-causal-inference`) | | `case-study` | Disease case study / validation run (`bioresearch-disease-case-study`) | | `doctor` | Environment & reproducibility check (`bioresearch-environment-check`) | It is **intent translation, not reasoning**: it maps a request to an *existing* workflow and emits the matching CLI command. It does **not** generate, rank, or evaluate hypotheses, and uses **no model and no network** — the same input always yields the same route (deterministic). ## Run ```bash bioresearch route "find biomarkers for Parkinson's disease using GSE7621" bioresearch route "test the causal effect of BMI on type 2 diabetes with Mendelian randomization" ``` Output is JSON: `{route, confidence, matched_keywords, scores, rationale, suggestion}` plus a suggested CLI command. `confidence` is the share of all matched keywords belonging to the winning route; an unmatched intent returns `route: "unknown"` with a suggestion list of available routes. ## When to invoke An agent should call this router *first* when it gets