encode-toolkit

Featured

MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments

plugin 30 stars 5 forks Updated yesterday AGPL-3.0

Install

Plugins install via a marketplace, in two steps.

This plugin isn't listed in a marketplace we've indexed. Install it directly from its GitHub repository — the README has the setup steps.

View on GitHub

Bundles

Everything this plugin ships — skills, agents, commands, hooks, and MCP servers it bundles.

Agents (7)

atacseq-pipeline.md chipseq-pipeline.md cutandrun-pipeline.md dnaseseq-pipeline.md hic-pipeline.md rnaseq-pipeline.md wgbs-pipeline.md

Commands (10)

browse-files.md cite-encode.md compare-experiments.md cross-reference.md download-encode.md log-provenance.md manage-credentials.md quality-check.md search-encode.md track-experiments.md

Quality Score: 78/100

Stars 20%
50
Recency 20%
100
Manifest 20%
100
Documentation 15%
0
Issue Health 10%
50
License 10%
100
Description 5%
100

Details

Author
ammawla
Repository
ammawla/encode-toolkit
Created
4 months ago
Last Updated
yesterday
Language
Python
License
AGPL-3.0